Package edu.upf.taln.dri.module.importer.jats

Class ImporterJATS

java.lang.Object

gate.util.AbstractFeatureBearer

gate.creole.AbstractResource

gate.creole.AbstractProcessingResource

gate.creole.AbstractLanguageAnalyser

edu.upf.taln.dri.module.importer.ImporterBase

edu.upf.taln.dri.module.importer.jats.ImporterJATS

All Implemented Interfaces:

DRIModule, gate.creole.ANNIEConstants, gate.Executable, gate.LanguageAnalyser, gate.ProcessingResource, gate.Resource, gate.util.FeatureBearer, gate.util.NameBearer, Serializable

@CreoleResource(name="DRI Modules - JATS importer")
public class ImporterJATS
extends ImporterBase

From the JATS XML mark-up, this processing resource identifies all the textual contents, split their sentences by exploiting a customized REGEXP Sentence Splitter of ANNIE and store the new sentence annotations

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Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gate.creole.AbstractProcessingResource

gate.creole.AbstractProcessingResource.InternalStatusListener, gate.creole.AbstractProcessingResource.IntervalProgressListener

Field Summary

Fields

Modifier and Type	Field	Description
static String	JATSabstract
static String	JATSaffiliation
static String	JATSaffiliationAddressLine
static String	JATSaffiliationAddressLine_CITY
static String	JATSaffiliationAddressLine_EMAIL
static String	JATSaffiliationAddressLine_EXTLINK
static String	JATSaffiliationAddressLine_INSTITUTION
static String	JATSaffiliationAddressLine_STATE
static String	JATSaffiliationAddressLine_URI
static String	JATSannSet
static String	JATSbibEntry
static String	JATSbibEntry_IdFeat
static String	JATScitElem_AuthName
static String	JATScitElem_AuthName_GivenNames
static String	JATScitElem_AuthName_Surmane
static String	JATScitElem_Container
static String	JATScitElem_Day
static String	JATScitElem_Fpage
static String	JATScitElem_Issue
static String	JATScitElem_Link
static String	JATScitElem_Lpage
static String	JATScitElem_Month
static String	JATScitElem_PubId
static String	JATScitElem_PubId_typeFeat
static String	JATScitElem_PublisherLoc
static String	JATScitElem_PublisherName
static String	JATScitElem_Source
static String	JATScitElem_Title
static String	JATScitElem_Volume
static String	JATScitElem_Year
static String	JATScitMarker
static String	JATScitMarker_refIdFeat
static String	JATScitMarker_refTypeFeat
static String	JATScontrib
static String	JATScontrib_authTypeFeat
static String	JATScontribGivenName
static String	JATScontribName
static String	JATScontribSurname
static String	JATScontribXref
static String	JATSfigure
Function<gate.Annotation,Boolean>	JATSparsing
static String	JATSsection
static String	JATStable
static String	JATStitle

Fields inherited from class edu.upf.taln.dri.module.importer.ImporterBase

abstractAnnType, babelnet_AnnSet, babelnet_DisItem, babelnet_DisItem_babelnetURLfeat, babelnet_DisItem_coherenceScoreFeat, babelnet_DisItem_dbpediaURLfeat, babelnet_DisItem_golbalScoreFeat, babelnet_DisItem_numTokensFeat, babelnet_DisItem_scoreFeat, babelnet_DisItem_sourceFeat, babelnet_DisItem_synsetIDfeat, bibEntry_IdAnnFeat, bibEntryAnnType, captionAnnType, causality_AnnSet, coref_Candidate, coref_ChainAnnSet, coref_Coreference, coref_SpotAnnSet, driAnnSet, emailAnnType, figureAnnType, h1AnnType, h2AnnType, h3AnnType, h4AnnType, h5AnnType, headerAffilAnnType, headerAnnType, headerAuthorAnnType, headerDOC_Affiliation, headerDOC_AnnSet, headerDOC_Author, headerDOC_JAPEemail, headerDOC_Lookup, headerDOC_OrigDocFeat, headerDOC_Sentence, headerDOC_Token, inlineCitationAnnType, inlineCitationMarkerAnnType, langAnnFeat, metaAnnotator_AnnSet, metaAnnotator_FundingAgencyAnnType, metaAnnotator_LookupAnnType, metaAnnotator_OntologyAnnType, metaAnnotator_ProjectAnnType, outlayerAnnType, sentence_isAcknowledgement, sentence_lexRankScore, sentence_POSpatternFeat, sentence_RhetoricalAnnFeat, sentence_titleSimScore, sentenceAnnType, tableAnnType, term_AnnSet, term_CandOcc, term_CandOcc_actualPOSFeat, term_CandOcc_regexPOSFeat, titleAnnType, token_LemmaFeat, token_POSfeat, tokenAnnType

Fields inherited from class gate.creole.AbstractLanguageAnalyser

corpus, document

Fields inherited from class gate.creole.AbstractProcessingResource

interrupted

Fields inherited from class gate.creole.AbstractResource

name

Fields inherited from class gate.util.AbstractFeatureBearer

features

Fields inherited from interface gate.creole.ANNIEConstants

ANNOTATION_COREF_FEATURE_NAME, DATE_ANNOTATION_TYPE, DATE_POSTED_ANNOTATION_TYPE, DEFAULT_FILE, DOCUMENT_COREF_FEATURE_NAME, JOB_ID_ANNOTATION_TYPE, LOCATION_ANNOTATION_TYPE, LOOKUP_ANNOTATION_TYPE, LOOKUP_CLASS_FEATURE_NAME, LOOKUP_INSTANCE_FEATURE_NAME, LOOKUP_LANGUAGE_FEATURE_NAME, LOOKUP_MAJOR_TYPE_FEATURE_NAME, LOOKUP_MINOR_TYPE_FEATURE_NAME, LOOKUP_ONTOLOGY_FEATURE_NAME, MONEY_ANNOTATION_TYPE, ORGANIZATION_ANNOTATION_TYPE, PERSON_ANNOTATION_TYPE, PERSON_GENDER_FEATURE_NAME, PLUGIN_DIR, SENTENCE_ANNOTATION_TYPE, SPACE_TOKEN_ANNOTATION_TYPE, TOKEN_ANNOTATION_TYPE, TOKEN_CATEGORY_FEATURE_NAME, TOKEN_KIND_FEATURE_NAME, TOKEN_LENGTH_FEATURE_NAME, TOKEN_ORTH_FEATURE_NAME, TOKEN_STRING_FEATURE_NAME

Constructor Summary

Constructors

Constructor	Description
ImporterJATS()

Method Summary

Modifier and Type	Method	Description
void	execute()
String	getInputSentenceASname()
String	getInputSentenceAStype()
boolean	resetAnnotations()	Delete the annotations provided by a module
void	setInputSentenceASname(String inputSentenceASname)
void	setInputSentenceAStype(String inputSentenceAStype)

Methods inherited from class edu.upf.taln.dri.module.importer.ImporterBase

getInputASname, getOutputASname, setInputASname, setOutputASname

Methods inherited from class gate.creole.AbstractLanguageAnalyser

getCorpus, getDocument, setCorpus, setDocument

Methods inherited from class gate.creole.AbstractProcessingResource

addProgressListener, addStatusListener, cleanup, fireProcessFinished, fireProgressChanged, fireStatusChanged, getRuntimeParameterValues, getRuntimeParameterValues, init, interrupt, isInterrupted, reInit, removeProgressListener, removeStatusListener

Methods inherited from class gate.creole.AbstractResource

checkParameterValues, flushBeanInfoCache, forgetBeanInfo, getBeanInfo, getInitParameterValues, getInitParameterValues, getName, getParameterValue, getParameterValue, getParameterValues, removeResourceListeners, setName, setParameterValue, setParameterValue, setParameterValues, setParameterValues, setResourceListeners, toString

Methods inherited from class gate.util.AbstractFeatureBearer

getFeatures, setFeatures

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gate.Executable

interrupt, isInterrupted

Methods inherited from interface gate.util.FeatureBearer

getFeatures, setFeatures

Methods inherited from interface gate.util.NameBearer

getName, setName

Methods inherited from interface gate.ProcessingResource

reInit

Methods inherited from interface gate.Resource

cleanup, getParameterValue, init, setParameterValue, setParameterValues

Field Detail

JATSannSet

public static final String JATSannSet

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Constant Field Values

JATSbibEntry

public static final String JATSbibEntry

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Constant Field Values

JATSbibEntry_IdFeat

public static final String JATSbibEntry_IdFeat

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Constant Field Values

JATScitMarker

public static final String JATScitMarker

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Constant Field Values

JATScitMarker_refTypeFeat

public static final String JATScitMarker_refTypeFeat

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Constant Field Values

JATScitMarker_refIdFeat

public static final String JATScitMarker_refIdFeat

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Constant Field Values

JATScitElem_Container

public static final String JATScitElem_Container

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Constant Field Values

JATScitElem_Year

public static final String JATScitElem_Year

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Constant Field Values

JATScitElem_Day

public static final String JATScitElem_Day

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Constant Field Values

JATScitElem_Month

public static final String JATScitElem_Month

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Constant Field Values

JATScitElem_Title

public static final String JATScitElem_Title

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Constant Field Values

JATScitElem_Source

public static final String JATScitElem_Source

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Constant Field Values

JATScitElem_Volume

public static final String JATScitElem_Volume

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Constant Field Values

JATScitElem_Issue

public static final String JATScitElem_Issue

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Constant Field Values

JATScitElem_Fpage

public static final String JATScitElem_Fpage

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Constant Field Values

JATScitElem_Lpage

public static final String JATScitElem_Lpage

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Constant Field Values

JATScitElem_Link

public static final String JATScitElem_Link

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Constant Field Values

JATScitElem_PubId

public static final String JATScitElem_PubId

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Constant Field Values

JATScitElem_PubId_typeFeat

public static final String JATScitElem_PubId_typeFeat

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Constant Field Values

JATScitElem_AuthName

public static final String JATScitElem_AuthName

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Constant Field Values

JATScitElem_AuthName_Surmane

public static final String JATScitElem_AuthName_Surmane

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Constant Field Values

JATScitElem_AuthName_GivenNames

public static final String JATScitElem_AuthName_GivenNames

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Constant Field Values

JATScitElem_PublisherName

public static final String JATScitElem_PublisherName

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Constant Field Values

JATScitElem_PublisherLoc

public static final String JATScitElem_PublisherLoc

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Constant Field Values

JATSabstract

public static final String JATSabstract

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Constant Field Values

JATStitle

public static final String JATStitle

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Constant Field Values

JATSsection

public static final String JATSsection

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Constant Field Values

JATSfigure

public static final String JATSfigure

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Constant Field Values

JATStable

public static final String JATStable

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Constant Field Values

JATScontrib

public static final String JATScontrib

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Constant Field Values

JATScontrib_authTypeFeat

public static final String JATScontrib_authTypeFeat

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Constant Field Values

JATScontribName

public static final String JATScontribName

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Constant Field Values

JATScontribGivenName

public static final String JATScontribGivenName

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Constant Field Values

JATScontribSurname

public static final String JATScontribSurname

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Constant Field Values

JATScontribXref

public static final String JATScontribXref

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Constant Field Values

JATSaffiliation

public static final String JATSaffiliation

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Constant Field Values

JATSaffiliationAddressLine

public static final String JATSaffiliationAddressLine

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Constant Field Values

JATSaffiliationAddressLine_INSTITUTION

public static final String JATSaffiliationAddressLine_INSTITUTION

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Constant Field Values

JATSaffiliationAddressLine_CITY

public static final String JATSaffiliationAddressLine_CITY

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Constant Field Values

JATSaffiliationAddressLine_STATE

public static final String JATSaffiliationAddressLine_STATE

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Constant Field Values

JATSaffiliationAddressLine_EMAIL

public static final String JATSaffiliationAddressLine_EMAIL

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Constant Field Values

JATSaffiliationAddressLine_EXTLINK

public static final String JATSaffiliationAddressLine_EXTLINK

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Constant Field Values

JATSaffiliationAddressLine_URI

public static final String JATSaffiliationAddressLine_URI

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Constant Field Values

JATSparsing

public Function<gate.Annotation,Boolean> JATSparsing

Constructor Detail

ImporterJATS

public ImporterJATS()

Method Detail

getInputSentenceASname

public String getInputSentenceASname()

setInputSentenceASname

@RunTime
@CreoleParameter(defaultValue="Analysis",
                 comment="The name of the input annotation set to read sentence annotations from (sentence annotations previously added by sentence splitter execution)")
public void setInputSentenceASname(String inputSentenceASname)

getInputSentenceAStype

public String getInputSentenceAStype()

setInputSentenceAStype

@RunTime
@CreoleParameter(defaultValue="Sentence",
                 comment="The name of the input annotation type to read sentence annotations (sentence annotations previously added by sentence splitter execution)")
public void setInputSentenceAStype(String inputSentenceAStype)

execute

public void execute()
             throws gate.creole.ExecutionException

Specified by:

execute in interface gate.Executable

Overrides:

execute in class gate.creole.AbstractProcessingResource

Throws:

gate.creole.ExecutionException

resetAnnotations

public boolean resetAnnotations()

Description copied from interface: DRIModule

Delete the annotations provided by a module

Returns: